The complete nucleotide sequence and genomic organization of Citrus Leprosis associated Virus, Cytoplasmatic type (CiLV-C).
Identifieur interne : 002505 ( Main/Exploration ); précédent : 002504; suivant : 002506The complete nucleotide sequence and genomic organization of Citrus Leprosis associated Virus, Cytoplasmatic type (CiLV-C).
Auteurs : Renata C. Pascon [Brésil] ; João Paulo Kitajima ; Michèle C. Breton ; Laura Assumpção ; Christian Greggio ; Almir S. Zanca ; Vagner Katsumi Okura ; Marcos C. Alegria ; Maria E. Camargo ; Giovana G C. Silva ; Jussara C. Cardozo ; Marcelo A. Vallim ; Sulamita F. Franco ; Vitor H. Silva ; Hamilton Jordão ; Fernanda Oliveira ; Poliana F. Giachetto ; Fernanda Ferrari ; Carlos I. Aguilar-Vildoso ; Fabrício J B. Franchiscini ; José M F. Silva ; Paulo Arruda ; Jesus A. Ferro ; Fernando Reinach ; Ana Cláudia Rasera Da SilvaSource :
- Virus genes [ 0920-8569 ] ; 2006.
English descriptors
- KwdEn :
- Base Sequence, Citrus sinensis (virology), Genome, Viral, Molecular Sequence Data, Phylogeny, Plant Diseases (virology), Plant Leaves (virology), Plant Viruses (classification), Plant Viruses (genetics), RNA Viruses (classification), RNA Viruses (genetics), RNA, Viral (analysis), RNA, Viral (isolation & purification), Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.
- MESH :
- chemical , analysis : RNA, Viral.
- classification : Plant Viruses, RNA Viruses.
- genetics : Plant Viruses, RNA Viruses.
- chemical , isolation & purification : RNA, Viral.
- virology : Citrus sinensis, Plant Diseases, Plant Leaves.
- Base Sequence, Genome, Viral, Molecular Sequence Data, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.
Abstract
The Citrus leprosis disease (CiL) is associated to a virus (CiLV) transmitted by Brevipalpus spp. mites (Acari: Tenuipalpidae). CiL is endemic in Brazil and its recently spreading to Central America represents a threat to citrus industry in the USA. Electron microscopy images show two forms of CiLV: a rare nuclear form, characterized by rod-shaped naked particle (CiLV-N) and a common cytoplasmic form (CiLV-C) associated with bacilliform-enveloped particle and cytoplasmic viroplasm. Due to this morphological feature, CiLV-C has been treated as Rhabdovirus-like. In this paper we present the complete nucleotide sequence and genomic organization of CiLV-C. It is a bipartite virus with sequence similarity to ssRNA positive plant virus. RNA1 encodes a putative replicase polyprotein and an ORF with no known function. RNA2 encodes 4 ORFs. pl5, p24 and p61 have no significant similarity to any known proteins and p32 encodes a protein with similarity to a viral movement protein. The CiLV-C sequences are associated with typical symptoms of CiL by RT-PCR. Phylogenetic analysis suggests that CiLV-C is probably a member of a new family of plant virus evolutionarily related to Tobamovirus.
DOI: 10.1007/s11262-005-6913-1
PubMed: 16732481
Affiliations:
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Zanca</name></author><author><name sortKey="Okura, Vagner Katsumi" sort="Okura, Vagner Katsumi" uniqKey="Okura V" first="Vagner Katsumi" last="Okura">Vagner Katsumi Okura</name></author><author><name sortKey="Alegria, Marcos C" sort="Alegria, Marcos C" uniqKey="Alegria M" first="Marcos C" last="Alegria">Marcos C. Alegria</name></author><author><name sortKey="Camargo, Maria E" sort="Camargo, Maria E" uniqKey="Camargo M" first="Maria E" last="Camargo">Maria E. Camargo</name></author><author><name sortKey="Silva, Giovana G C" sort="Silva, Giovana G C" uniqKey="Silva G" first="Giovana G C" last="Silva">Giovana G C. Silva</name></author><author><name sortKey="Cardozo, Jussara C" sort="Cardozo, Jussara C" uniqKey="Cardozo J" first="Jussara C" last="Cardozo">Jussara C. Cardozo</name></author><author><name sortKey="Vallim, Marcelo A" sort="Vallim, Marcelo A" uniqKey="Vallim M" first="Marcelo A" last="Vallim">Marcelo A. 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Pascon</name><affiliation wicri:level="2"><nlm:affiliation>Alellyx Applied Genomics, Techno Park (Rod. Anhanguera Km 104), Rua James Clerk Maxwell 320, 13069-380, Campinas, SP, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Alellyx Applied Genomics, Techno Park (Rod. Anhanguera Km 104), Rua James Clerk Maxwell 320, 13069-380, Campinas, SP</wicri:regionArea><placeName><region type="state">État de São Paulo</region></placeName></affiliation></author><author><name sortKey="Kitajima, Joao Paulo" sort="Kitajima, Joao Paulo" uniqKey="Kitajima J" first="João Paulo" last="Kitajima">João Paulo Kitajima</name></author><author><name sortKey="Breton, Michele C" sort="Breton, Michele C" uniqKey="Breton M" first="Michèle C" last="Breton">Michèle C. Breton</name></author><author><name sortKey="Assumpcao, Laura" sort="Assumpcao, Laura" uniqKey="Assumpcao L" first="Laura" last="Assumpção">Laura Assumpção</name></author><author><name sortKey="Greggio, Christian" sort="Greggio, Christian" uniqKey="Greggio C" first="Christian" last="Greggio">Christian Greggio</name></author><author><name sortKey="Zanca, Almir S" sort="Zanca, Almir S" uniqKey="Zanca A" first="Almir S" last="Zanca">Almir S. Zanca</name></author><author><name sortKey="Okura, Vagner Katsumi" sort="Okura, Vagner Katsumi" uniqKey="Okura V" first="Vagner Katsumi" last="Okura">Vagner Katsumi Okura</name></author><author><name sortKey="Alegria, Marcos C" sort="Alegria, Marcos C" uniqKey="Alegria M" first="Marcos C" last="Alegria">Marcos C. Alegria</name></author><author><name sortKey="Camargo, Maria E" sort="Camargo, Maria E" uniqKey="Camargo M" first="Maria E" last="Camargo">Maria E. Camargo</name></author><author><name sortKey="Silva, Giovana G C" sort="Silva, Giovana G C" uniqKey="Silva G" first="Giovana G C" last="Silva">Giovana G C. Silva</name></author><author><name sortKey="Cardozo, Jussara C" sort="Cardozo, Jussara C" uniqKey="Cardozo J" first="Jussara C" last="Cardozo">Jussara C. Cardozo</name></author><author><name sortKey="Vallim, Marcelo A" sort="Vallim, Marcelo A" uniqKey="Vallim M" first="Marcelo A" last="Vallim">Marcelo A. Vallim</name></author><author><name sortKey="Franco, Sulamita F" sort="Franco, Sulamita F" uniqKey="Franco S" first="Sulamita F" last="Franco">Sulamita F. Franco</name></author><author><name sortKey="Silva, Vitor H" sort="Silva, Vitor H" uniqKey="Silva V" first="Vitor H" last="Silva">Vitor H. Silva</name></author><author><name sortKey="Jordao, Hamilton" sort="Jordao, Hamilton" uniqKey="Jordao H" first="Hamilton" last="Jordão">Hamilton Jordão</name></author><author><name sortKey="Oliveira, Fernanda" sort="Oliveira, Fernanda" uniqKey="Oliveira F" first="Fernanda" last="Oliveira">Fernanda Oliveira</name></author><author><name sortKey="Giachetto, Poliana F" sort="Giachetto, Poliana F" uniqKey="Giachetto P" first="Poliana F" last="Giachetto">Poliana F. Giachetto</name></author><author><name sortKey="Ferrari, Fernanda" sort="Ferrari, Fernanda" uniqKey="Ferrari F" first="Fernanda" last="Ferrari">Fernanda Ferrari</name></author><author><name sortKey="Aguilar Vildoso, Carlos I" sort="Aguilar Vildoso, Carlos I" uniqKey="Aguilar Vildoso C" first="Carlos I" last="Aguilar-Vildoso">Carlos I. Aguilar-Vildoso</name></author><author><name sortKey="Franchiscini, Fabricio J B" sort="Franchiscini, Fabricio J B" uniqKey="Franchiscini F" first="Fabrício J B" last="Franchiscini">Fabrício J B. Franchiscini</name></author><author><name sortKey="Silva, Jose M F" sort="Silva, Jose M F" uniqKey="Silva J" first="José M F" last="Silva">José M F. Silva</name></author><author><name sortKey="Arruda, Paulo" sort="Arruda, Paulo" uniqKey="Arruda P" first="Paulo" last="Arruda">Paulo Arruda</name></author><author><name sortKey="Ferro, Jesus A" sort="Ferro, Jesus A" uniqKey="Ferro J" first="Jesus A" last="Ferro">Jesus A. Ferro</name></author><author><name sortKey="Reinach, Fernando" sort="Reinach, Fernando" uniqKey="Reinach F" first="Fernando" last="Reinach">Fernando Reinach</name></author><author><name sortKey="Da Silva, Ana Claudia Rasera" sort="Da Silva, Ana Claudia Rasera" uniqKey="Da Silva A" first="Ana Cláudia Rasera" last="Da Silva">Ana Cláudia Rasera Da Silva</name></author></analytic><series><title level="j">Virus genes</title><idno type="ISSN">0920-8569</idno><imprint><date when="2006" type="published">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence</term><term>Citrus sinensis (virology)</term><term>Genome, Viral</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Plant Diseases (virology)</term><term>Plant Leaves (virology)</term><term>Plant Viruses (classification)</term><term>Plant Viruses (genetics)</term><term>RNA Viruses (classification)</term><term>RNA Viruses (genetics)</term><term>RNA, Viral (analysis)</term><term>RNA, Viral (isolation & purification)</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Plant Viruses</term><term>RNA Viruses</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Viruses</term><term>RNA Viruses</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Citrus sinensis</term><term>Plant Diseases</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Genome, Viral</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Citrus leprosis disease (CiL) is associated to a virus (CiLV) transmitted by Brevipalpus spp. mites (Acari: Tenuipalpidae). CiL is endemic in Brazil and its recently spreading to Central America represents a threat to citrus industry in the USA. Electron microscopy images show two forms of CiLV: a rare nuclear form, characterized by rod-shaped naked particle (CiLV-N) and a common cytoplasmic form (CiLV-C) associated with bacilliform-enveloped particle and cytoplasmic viroplasm. Due to this morphological feature, CiLV-C has been treated as Rhabdovirus-like. In this paper we present the complete nucleotide sequence and genomic organization of CiLV-C. It is a bipartite virus with sequence similarity to ssRNA positive plant virus. RNA1 encodes a putative replicase polyprotein and an ORF with no known function. RNA2 encodes 4 ORFs. pl5, p24 and p61 have no significant similarity to any known proteins and p32 encodes a protein with similarity to a viral movement protein. The CiLV-C sequences are associated with typical symptoms of CiL by RT-PCR. Phylogenetic analysis suggests that CiLV-C is probably a member of a new family of plant virus evolutionarily related to Tobamovirus.</div></front></TEI><affiliations><list><country><li>Brésil</li></country><region><li>État de São Paulo</li></region></list><tree><noCountry><name sortKey="Aguilar Vildoso, Carlos I" sort="Aguilar Vildoso, Carlos I" uniqKey="Aguilar Vildoso C" first="Carlos I" last="Aguilar-Vildoso">Carlos I. Aguilar-Vildoso</name><name sortKey="Alegria, Marcos C" sort="Alegria, Marcos C" uniqKey="Alegria M" first="Marcos C" last="Alegria">Marcos C. Alegria</name><name sortKey="Arruda, Paulo" sort="Arruda, Paulo" uniqKey="Arruda P" first="Paulo" last="Arruda">Paulo Arruda</name><name sortKey="Assumpcao, Laura" sort="Assumpcao, Laura" uniqKey="Assumpcao L" first="Laura" last="Assumpção">Laura Assumpção</name><name sortKey="Breton, Michele C" sort="Breton, Michele C" uniqKey="Breton M" first="Michèle C" last="Breton">Michèle C. Breton</name><name sortKey="Camargo, Maria E" sort="Camargo, Maria E" uniqKey="Camargo M" first="Maria E" last="Camargo">Maria E. Camargo</name><name sortKey="Cardozo, Jussara C" sort="Cardozo, Jussara C" uniqKey="Cardozo J" first="Jussara C" last="Cardozo">Jussara C. Cardozo</name><name sortKey="Da Silva, Ana Claudia Rasera" sort="Da Silva, Ana Claudia Rasera" uniqKey="Da Silva A" first="Ana Cláudia Rasera" last="Da Silva">Ana Cláudia Rasera Da Silva</name><name sortKey="Ferrari, Fernanda" sort="Ferrari, Fernanda" uniqKey="Ferrari F" first="Fernanda" last="Ferrari">Fernanda Ferrari</name><name sortKey="Ferro, Jesus A" sort="Ferro, Jesus A" uniqKey="Ferro J" first="Jesus A" last="Ferro">Jesus A. Ferro</name><name sortKey="Franchiscini, Fabricio J B" sort="Franchiscini, Fabricio J B" uniqKey="Franchiscini F" first="Fabrício J B" last="Franchiscini">Fabrício J B. Franchiscini</name><name sortKey="Franco, Sulamita F" sort="Franco, Sulamita F" uniqKey="Franco S" first="Sulamita F" last="Franco">Sulamita F. Franco</name><name sortKey="Giachetto, Poliana F" sort="Giachetto, Poliana F" uniqKey="Giachetto P" first="Poliana F" last="Giachetto">Poliana F. Giachetto</name><name sortKey="Greggio, Christian" sort="Greggio, Christian" uniqKey="Greggio C" first="Christian" last="Greggio">Christian Greggio</name><name sortKey="Jordao, Hamilton" sort="Jordao, Hamilton" uniqKey="Jordao H" first="Hamilton" last="Jordão">Hamilton Jordão</name><name sortKey="Kitajima, Joao Paulo" sort="Kitajima, Joao Paulo" uniqKey="Kitajima J" first="João Paulo" last="Kitajima">João Paulo Kitajima</name><name sortKey="Okura, Vagner Katsumi" sort="Okura, Vagner Katsumi" uniqKey="Okura V" first="Vagner Katsumi" last="Okura">Vagner Katsumi Okura</name><name sortKey="Oliveira, Fernanda" sort="Oliveira, Fernanda" uniqKey="Oliveira F" first="Fernanda" last="Oliveira">Fernanda Oliveira</name><name sortKey="Reinach, Fernando" sort="Reinach, Fernando" uniqKey="Reinach F" first="Fernando" last="Reinach">Fernando Reinach</name><name sortKey="Silva, Giovana G C" sort="Silva, Giovana G C" uniqKey="Silva G" first="Giovana G C" last="Silva">Giovana G C. Silva</name><name sortKey="Silva, Jose M F" sort="Silva, Jose M F" uniqKey="Silva J" first="José M F" last="Silva">José M F. Silva</name><name sortKey="Silva, Vitor H" sort="Silva, Vitor H" uniqKey="Silva V" first="Vitor H" last="Silva">Vitor H. Silva</name><name sortKey="Vallim, Marcelo A" sort="Vallim, Marcelo A" uniqKey="Vallim M" first="Marcelo A" last="Vallim">Marcelo A. Vallim</name><name sortKey="Zanca, Almir S" sort="Zanca, Almir S" uniqKey="Zanca A" first="Almir S" last="Zanca">Almir S. Zanca</name></noCountry><country name="Brésil"><region name="État de São Paulo"><name sortKey="Pascon, Renata C" sort="Pascon, Renata C" uniqKey="Pascon R" first="Renata C" last="Pascon">Renata C. Pascon</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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